How to cite Echinobase

The NIH requests that NIH-funded resources be cited by authors who used these publicly funded resources. Similarly, the NIH and many major publishing houses, such as Nature Publishing Group, Elsevier, Wiley, and Company of Biologists request authors use RRID numbers to accurately identify the reagents and database/software resources used in their research. Echinobase is such a resource- Please cite Echinobase in the references and in the materials and methods sections of your publications.

• Cite Echinobase in your References:
  • Telmer CA, Karimi K, Chess MM, Agalakov S, Arshinoff BI, Lotay V, Wang DZ, Chu S, Pells TJ, Vize PD, Hinman VF, Ettensohn CA, Echinobase: a resource to support the echinoderm research community, Genetics, iyae002, 10.1093/genetics/iyae002


• Logo: can be used in powerpoint presentations, posters, etc.

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Echinobase Publications

2024
• Telmer CA, Karimi K, Chess MM, Agalakov S, Arshinoff BI, Lotay V, Wang DZ, Chu S, Pells TJ, Vize PD, Hinman VF, Ettensohn CA, Echinobase: a resource to support the echinoderm research community, Genetics, iyae002, 10.1093/genetics/iyae002

2023
• Chess MM, Douglas W, Saunders J, Ettensohn CA, Echinobase: Genome-wide identification and spatiotemporal expression analysis of cadherin superfamily members in echinoderms, EvoDevo, 14, 15 (2023), 10.1186/s13227-023-00219-7

2022
• Arshinoff BI, Cary GA, Karimi K, Foley S, Agalakov S, Delgado F, Lotay VS, Ku CJ, Pells TJ, Beatman TR, Kim E, Cameron RA, Vize PD, Telmer CA, Croce J, Ettensohn CA, Hinman VF, Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms, Nucleic Acids Research, Volume 50, Issue D1, 10.1093/nar/gkab1005

2021
• Foley S, Ku C, Arshinoff B, Lotay V, Karimi K, Vize PD, Hinman V, Integration of 1:1 orthology maps and updated datasets into Echinobase, Database (Oxford), Volume 2021, baab030, 10.1093/database/baab030


• Beatman, TR, Buckley, KM, Cary, GA, Hinman, VF, Ettensohn, CA, A nomenclature for echinoderm genes, Database (Oxford), Volume 2021, baab052, 10.1093/database/baab052


• Karimi, K, Agalakov, S, Telmer, CA, Beatman TR, Pells, TJ, Arshinoff, BI, Ku, CJ, Foley, S, Hinman, VF, Ettensohn, CA, Vize, PD, Classifying domain-specific text documents containing ambiguous keywords, Database (Oxford), Volume 2021, baab062, 10.1093/database/baab062

2018
• Cary GA, Cameron RA, Hinman VF, EchinoBase: Tools for Echinoderm Genome Analyses, Methods Mol Biol., 1757:349-369, doi:10.1007/978-1-4939-7737-6_12

2017
• Kudtarkar P, Cameron RA, Echinobase: an expanding resource for echinoderm genomic information, Database (Oxford), Volume 2017, bax074, doi.org/10.1093/database/bax074


• Echinobase White Paper

2015
• Cameron RA, Kudtarkar P, Gordon SM, Worley KC. Gibbs RA, Do echinoderm genomes measure up?, Mar Genomics., 22:1-9. doi:10.1016/j.margen.2015.02.004.17

2014
• Cameron RA, Tools for sea urchin genomic analysis, Methods Mol Biol., 1128:295-310, doi:10.1007/978-1-62703-974-1_20

2009
• Cameron RA, Samanta M, Yuan A, He D, Davidson E, SpBase: the sea urchin genome database and web site, Nucleic Acids Res., Database issue:D750-4, doi:10.1093/nar/gkn887