Hamdoun lab gene expression atlas
Lytechinus pictus (painted urchin)
Images contributed by the Hamdoun Lab (University of California San Diego). Both series use hybridization chain reaction (HCR). Early-embryo series: Yoon Lee. Gastrula–juvenile series: Chloe Jenniches.
Whole-mount HCR expression images for L. pictus genes, linked from each gene’s Expression tab. Localizations are annotated with the Echinoderm Anatomy and Development Ontology (ECAO). Developmental stages follow the sea urchin ECAO series (shared with S. purpuratus).
About the images
- Early-embryo series (202 images, 101 genes) — HCR in situ at about 12, 24, and 36 hours post fertilization. Photographed by Yoon Lee.
- Gastrula–juvenile series (314 images, 80 genes) — HCR at gastrula, early larva, late larva, and juvenile stages. Photographed by Chloe Jenniches.
- 14 genes appear in both series; 87 in the early-embryo series only; 66 in the gastrula–juvenile series only.
- Thumbnails below are the same images as each gene’s Expression tab: HCR signal and DAPI overlay / composite (gastrula–juvenile overlays use magenta for the gene and grey for DAPI). Click a thumbnail for the lightbox (annotation, stages, and a larger-image link).
Developmental stages
Click a stage name to list genes annotated with that term on this page. The ECAO link beside it opens the ontology page. See also the ECAO overview.
| Stage | Early-embryo images | Gastrula–juvenile images | Total |
|---|---|---|---|
| mid-mesenchyme blastula stage ECAO | 202 | 0 | 202 |
| mid-gastrula stage ECAO | 202 | 146 | 348 |
| late gastrula stage ECAO | 202 | 0 | 202 |
| early feeding larva period ECAO | 0 | 154 | 154 |
| late feeding larva period ECAO | 0 | 6 | 6 |
| early juvenile stage ECAO | 0 | 8 | 8 |
Tissues and cell types
Click a term to list genes annotated with that tissue or cell type. The ECAO link beside it opens the ontology page.
| Term | Early-embryo annotations | Gastrula–juvenile annotations | Total |
|---|---|---|---|
| whole organism ECAO | 33 | 59 | 92 |
| ectoderm ECAO | 77 | 12 | 89 |
| mesoderm ECAO | 84 | 4 | 88 |
| endoderm ECAO | 48 | 5 | 53 |
| neuron ECAO | 0 | 17 | 17 |
| non-skeletogenic mesoderm ECAO | 11 | 0 | 11 |
| mesenchyme cell ECAO | 0 | 10 | 10 |
| apical organ ECAO | 0 | 9 | 9 |
| postoral neuron ECAO | 0 | 8 | 8 |
| ciliary band ECAO | 0 | 7 | 7 |
| dopaminergic neuron ECAO | 0 | 5 | 5 |
| serotonergic neuron ECAO | 0 | 5 | 5 |
| ciliary band neuron ECAO | 0 | 4 | 4 |
| apical ectoderm ECAO | 1 | 2 | 3 |
| endoderm associated neuron ECAO | 0 | 3 | 3 |
| larval digestive system ECAO | 0 | 3 | 3 |
| left coelomic pouch ECAO | 0 | 3 | 3 |
| right coelomic pouch ECAO | 0 | 3 | 3 |
| cholinergic neuron ECAO | 0 | 2 | 2 |
| coelomic pouch ECAO | 0 | 2 | 2 |
| foregut ECAO | 0 | 2 | 2 |
| sensory neuron ECAO | 0 | 2 | 2 |
| synaptotagmin-B neuron ECAO | 0 | 2 | 2 |
| embryonic skeletogenic mesenchyme cell ECAO | 0 | 1 | 1 |
| GABAergic neuron ECAO | 0 | 1 | 1 |
| hindgut ECAO | 0 | 1 | 1 |
| larval skeletogenic mesenchyme cell ECAO | 0 | 1 | 1 |
| midgut ECAO | 0 | 1 | 1 |
| presumptive ciliary band neuron ECAO | 0 | 1 | 1 |
| presumptive neuron ECAO | 0 | 1 | 1 |
Genes with images
Both series (14) · Early embryo only (87) · Gastrula–juvenile only (66) · A–Z
Filter:
In both series (14)
col2a1 (LOC129257175)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: mesenchyme cell, mesoderm
LOC119737432 (LOC129270823)
early embryo (2 images) · gastrula–juvenile (6 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: mesenchyme cell, mesoderm, neuron
LOC119744645 (LOC129264203)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ciliary band neuron, coelomic pouch, ectoderm, mesenchyme cell, mesoderm, non-skeletogenic mesoderm
LOC129259176
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ciliary band, whole organism
LOC129274806
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: whole organism
LOC129279253
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: whole organism
LOC129281934
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: endoderm, larval digestive system, whole organism
LOC129283012
early embryo (2 images) · gastrula–juvenile (6 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: ectoderm, mesoderm, synaptotagmin-B neuron
LOC576560 (LOC129280430)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: mesoderm
LOC580049 (LOC129273684)
early embryo (2 images) · gastrula–juvenile (5 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period, early juvenile stage
LOC580388 (LOC129265334)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ectoderm, whole organism
LOC585065 (LOC129265852)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
pou1f1 (LOC129258751)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ectoderm, endoderm, neuron, right coelomic pouch
six6 (LOC129264799)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ectoderm, left coelomic pouch, mesoderm
Early-embryo series only (87)
abca3 (LOC129269427)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm, whole organism
abcb7 (LOC129259620)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, whole organism
abcc6 (LOC129269252)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
angpt1l (LOC129278042)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
ctnnb1 (LOC129262019)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
ebf2 (LOC129273692)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
eef1g (LOC129264648)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm, mesoderm, whole organism
ehfl (LOC129268395)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm, non-skeletogenic mesoderm
emap (LOC129265606)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
emx1l (LOC129272808)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
evxl (LOC129257168)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
foxa1 (LOC129265105)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
foxc1 (LOC129253963)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
foxg1 (LOC129265024)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
fzd4 (LOC129258915)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
fzd5 (LOC129259551)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
gcml (LOC129280682)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
gstz1 (LOC129264269)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
hbn (LOC129262583)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
Hbox7 (LOC129257170)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
hlf (LOC129260862)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm, mesoderm, whole organism
LOC100889251 (LOC129281348)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC100892279 (LOC129255648)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC100893335 (LOC129263819)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC100893606 (LOC129274404)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC115917876 (LOC129275920)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC115918360 (LOC129281515)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC115918890 (LOC129275167)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC115918926 (LOC129258838)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
LOC115919915 (LOC129274937)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC115922204 (LOC129261116)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC115923563 (LOC129270013)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC115926321 (LOC129283225)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC119745294 (LOC129264797)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129256830
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129257861
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
LOC129261966
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129262061
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129262185
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129263383
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129263715
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129263816
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129266493
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129268812
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129269044
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129270858
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm, non-skeletogenic mesoderm
LOC129270932
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129272335
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129276436
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129276581
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm, whole organism
LOC129276800
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
LOC129277896
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
LOC129278236
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129278955
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129279450
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129280354
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129281186
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129281606
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129281915
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129282968
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC575628 (LOC129254120)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC576308 (LOC129269050)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: apical ectoderm
LOC578575 (LOC129264914)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC588724 (LOC129269316)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC589794 (LOC129277741)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC591984 (LOC129262853)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC753216 (LOC129267751)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC764606 (LOC129278293)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
nkx2-1 (LOC129264876)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
ogt (LOC129261087)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
osr2 (LOC129254342)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
prdm1 (LOC129259016)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
ptch1 (LOC129271340)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
ptfa1 (LOC129275241)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
slc18a3 (LOC129282284)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
snai1 (LOC129277151)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
sox2 (LOC129278519)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
sox9 (LOC129269121)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
SpP19L (LOC129261134)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
tbr1 (LOC129259755)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
tbxt (LOC129258906)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
tp53bp1 (LOC129262594)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
traf3ip1 (LOC129256931)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
trpc4ap (LOC129254087)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
univin (LOC129264991)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
wnt8a (LOC129282012)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
zc4h2 (LOC129258895)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Gastrula–juvenile series only (66)
chat (LOC129281748)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: cholinergic neuron, ciliary band neuron, postoral neuron
crim1 (LOC129265188)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
epha2 (LOC129276820)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ectoderm
etv1 (LOC129255553)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ectoderm, left coelomic pouch
fezf2 (LOC129256965)
gastrula–juvenile (2 images)
Stages: mid-gastrula stage
Tissues: apical organ, serotonergic neuron
gabarap (LOC135156729)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
glul (LOC129277678)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
gpr83 (LOC129273049)
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: right coelomic pouch
hdc (LOC129255421)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
lhx9 (LOC135156757)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ
lmx1b (LOC129278259)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: postoral neuron
LOC100888955 (LOC135154215)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: dopaminergic neuron, left coelomic pouch, postoral neuron
LOC100889149 (LOC129255458)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: mesoderm
LOC100892898 (LOC129278338)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC105443914 (LOC129267779)
gastrula–juvenile (2 images)
Stages: mid-gastrula stage
Tissues: whole organism
LOC105444437 (LOC129283076)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC115919001 (LOC129271204)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC115922565 (LOC129282517)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: serotonergic neuron
LOC115923516 (LOC129269211)
gastrula–juvenile (4 images)
LOC115927050 (LOC129272345)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ectoderm
LOC119727692 (LOC129260662)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ciliary band, ectoderm
LOC119729091 (LOC129261591)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC119731782 (LOC129276878)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC119741205 (LOC129282799)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical ectoderm, whole organism
LOC119746260 (LOC129260009)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: dopaminergic neuron, postoral neuron
LOC129254330
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: mesenchyme cell
LOC129259158
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC129261708
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: mesenchyme cell
LOC129264094
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC129271067
gastrula–juvenile (6 images)
Stages: mid-gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: neuron
LOC129271974
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: foregut, mesenchyme cell
LOC129272622
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC129278503
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
LOC129281609
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: sensory neuron
LOC129282077
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ, ectoderm, whole organism
LOC135154238
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: endoderm associated neuron
LOC575215 (LOC129255594)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC575887 (LOC135154775)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
LOC576912 (LOC129282401)
gastrula–juvenile (6 images)
Stages: mid-gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: ciliary band, coelomic pouch, endoderm, larval digestive system, postoral neuron
LOC579659 (LOC129257113)
gastrula–juvenile (5 images)
Stages: mid-gastrula stage, early feeding larva period, early juvenile stage
Tissues: GABAergic neuron, whole organism
LOC580381 (LOC129258037)
gastrula–juvenile (4 images)
Stages: early feeding larva period, late feeding larva period, early juvenile stage
Tissues: apical organ
LOC580742 (LOC129283341)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC581383 (LOC129268826)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
LOC582743 (LOC129262409)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC583959 (LOC129277725)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: endoderm, whole organism
LOC584300 (LOC129281479)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC584852 (LOC129261991)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC585532 (LOC129274152)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical ectoderm, right coelomic pouch
LOC586872 (LOC129266325)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC587080 (LOC129279022)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC589697 (LOC129261904)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: embryonic skeletogenic mesenchyme cell, larval skeletogenic mesenchyme cell
LOC590159 (LOC129279271)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC593338 (LOC129258652)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC752995 (LOC135154716)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC752998 (LOC129272917)
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: endoderm associated neuron
LOC762451 (LOC129273701)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
meox1 (LOC129255974)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ, serotonergic neuron
neurod1 (LOC129274702)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: presumptive ciliary band neuron, presumptive neuron
neurog2l (LOC129281757)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ciliary band neuron
nos1 (LOC129254933)
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: whole organism
pacrg (LOC129279612)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ciliary band
rrh (LOC129255114)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ
sox4 (LOC129280566)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: endoderm associated neuron, mesenchyme cell, neuron
th (LOC129282398)
gastrula–juvenile (6 images)
Stages: mid-gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: dopaminergic neuron
timeless (LOC129257917)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
Alphabetical index
A C E F G H L M N O P R S T U W Z
A
abca3 (LOC129269427)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm, whole organism
abcb7 (LOC129259620)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, whole organism
abcc6 (LOC129269252)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
angpt1l (LOC129278042)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
C
chat (LOC129281748)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: cholinergic neuron, ciliary band neuron, postoral neuron
col2a1 (LOC129257175)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: mesenchyme cell, mesoderm
crim1 (LOC129265188)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
ctnnb1 (LOC129262019)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
E
ebf2 (LOC129273692)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
eef1g (LOC129264648)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm, mesoderm, whole organism
ehfl (LOC129268395)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm, non-skeletogenic mesoderm
emap (LOC129265606)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
emx1l (LOC129272808)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
epha2 (LOC129276820)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ectoderm
etv1 (LOC129255553)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ectoderm, left coelomic pouch
evxl (LOC129257168)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
F
fezf2 (LOC129256965)
gastrula–juvenile (2 images)
Stages: mid-gastrula stage
Tissues: apical organ, serotonergic neuron
foxa1 (LOC129265105)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
foxc1 (LOC129253963)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
foxg1 (LOC129265024)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
fzd4 (LOC129258915)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
fzd5 (LOC129259551)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
G
gabarap (LOC135156729)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
gcml (LOC129280682)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
glul (LOC129277678)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
gpr83 (LOC129273049)
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: right coelomic pouch
gstz1 (LOC129264269)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
H
hbn (LOC129262583)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
Hbox7 (LOC129257170)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
hdc (LOC129255421)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
hlf (LOC129260862)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm, mesoderm, whole organism
L
lhx9 (LOC135156757)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ
lmx1b (LOC129278259)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: postoral neuron
LOC100888955 (LOC135154215)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: dopaminergic neuron, left coelomic pouch, postoral neuron
LOC100889149 (LOC129255458)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: mesoderm
LOC100889251 (LOC129281348)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC100892279 (LOC129255648)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC100892898 (LOC129278338)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC100893335 (LOC129263819)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC100893606 (LOC129274404)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC105443914 (LOC129267779)
gastrula–juvenile (2 images)
Stages: mid-gastrula stage
Tissues: whole organism
LOC105444437 (LOC129283076)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC115917876 (LOC129275920)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC115918360 (LOC129281515)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC115918890 (LOC129275167)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC115918926 (LOC129258838)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
LOC115919001 (LOC129271204)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC115919915 (LOC129274937)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC115922204 (LOC129261116)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC115922565 (LOC129282517)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: serotonergic neuron
LOC115923516 (LOC129269211)
gastrula–juvenile (4 images)
LOC115923563 (LOC129270013)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC115926321 (LOC129283225)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC115927050 (LOC129272345)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ectoderm
LOC119727692 (LOC129260662)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ciliary band, ectoderm
LOC119729091 (LOC129261591)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC119731782 (LOC129276878)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC119737432 (LOC129270823)
early embryo (2 images) · gastrula–juvenile (6 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: mesenchyme cell, mesoderm, neuron
LOC119741205 (LOC129282799)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical ectoderm, whole organism
LOC119744645 (LOC129264203)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ciliary band neuron, coelomic pouch, ectoderm, mesenchyme cell, mesoderm, non-skeletogenic mesoderm
LOC119745294 (LOC129264797)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC119746260 (LOC129260009)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: dopaminergic neuron, postoral neuron
LOC129254330
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: mesenchyme cell
LOC129256830
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129257861
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
LOC129259158
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC129259176
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ciliary band, whole organism
LOC129261708
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: mesenchyme cell
LOC129261966
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129262061
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129262185
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129263383
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129263715
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129263816
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129264094
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC129266493
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129268812
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129269044
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129270858
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm, non-skeletogenic mesoderm
LOC129270932
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129271067
gastrula–juvenile (6 images)
Stages: mid-gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: neuron
LOC129271974
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: foregut, mesenchyme cell
LOC129272335
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129272622
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC129274806
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: whole organism
LOC129276436
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129276581
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm, whole organism
LOC129276800
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
LOC129277896
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
LOC129278236
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129278503
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
LOC129278955
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129279253
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: whole organism
LOC129279450
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
LOC129280354
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129281186
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC129281606
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC129281609
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: sensory neuron
LOC129281915
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129281934
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: endoderm, larval digestive system, whole organism
LOC129282077
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ, ectoderm, whole organism
LOC129282968
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC129283012
early embryo (2 images) · gastrula–juvenile (6 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: ectoderm, mesoderm, synaptotagmin-B neuron
LOC135154238
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: endoderm associated neuron
LOC575215 (LOC129255594)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC575628 (LOC129254120)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC575887 (LOC135154775)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
LOC576308 (LOC129269050)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: apical ectoderm
LOC576560 (LOC129280430)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: mesoderm
LOC576912 (LOC129282401)
gastrula–juvenile (6 images)
Stages: mid-gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: ciliary band, coelomic pouch, endoderm, larval digestive system, postoral neuron
LOC578575 (LOC129264914)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC579659 (LOC129257113)
gastrula–juvenile (5 images)
Stages: mid-gastrula stage, early feeding larva period, early juvenile stage
Tissues: GABAergic neuron, whole organism
LOC580049 (LOC129273684)
early embryo (2 images) · gastrula–juvenile (5 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period, early juvenile stage
LOC580381 (LOC129258037)
gastrula–juvenile (4 images)
Stages: early feeding larva period, late feeding larva period, early juvenile stage
Tissues: apical organ
LOC580388 (LOC129265334)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ectoderm, whole organism
LOC580742 (LOC129283341)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC581383 (LOC129268826)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: neuron
LOC582743 (LOC129262409)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC583959 (LOC129277725)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: endoderm, whole organism
LOC584300 (LOC129281479)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC584852 (LOC129261991)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC585065 (LOC129265852)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
LOC585532 (LOC129274152)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical ectoderm, right coelomic pouch
LOC586872 (LOC129266325)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC587080 (LOC129279022)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC588724 (LOC129269316)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
LOC589697 (LOC129261904)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: embryonic skeletogenic mesenchyme cell, larval skeletogenic mesenchyme cell
LOC589794 (LOC129277741)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
LOC590159 (LOC129279271)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC591984 (LOC129262853)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC593338 (LOC129258652)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC752995 (LOC135154716)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC752998 (LOC129272917)
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: endoderm associated neuron
LOC753216 (LOC129267751)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
LOC762451 (LOC129273701)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
LOC764606 (LOC129278293)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
M
meox1 (LOC129255974)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ, serotonergic neuron
N
neurod1 (LOC129274702)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: presumptive ciliary band neuron, presumptive neuron
neurog2l (LOC129281757)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ciliary band neuron
nkx2-1 (LOC129264876)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
nos1 (LOC129254933)
gastrula–juvenile (2 images)
Stages: early feeding larva period
Tissues: whole organism
O
ogt (LOC129261087)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
osr2 (LOC129254342)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
P
pacrg (LOC129279612)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: ciliary band
pou1f1 (LOC129258751)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ectoderm, endoderm, neuron, right coelomic pouch
prdm1 (LOC129259016)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
ptch1 (LOC129271340)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
ptfa1 (LOC129275241)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
R
rrh (LOC129255114)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: apical organ
S
six6 (LOC129264799)
early embryo (2 images) · gastrula–juvenile (4 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage, early feeding larva period
Tissues: ectoderm, left coelomic pouch, mesoderm
slc18a3 (LOC129282284)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
snai1 (LOC129277151)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
sox2 (LOC129278519)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: whole organism
sox4 (LOC129280566)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: endoderm associated neuron, mesenchyme cell, neuron
sox9 (LOC129269121)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
SpP19L (LOC129261134)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
T
tbr1 (LOC129259755)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm
tbxt (LOC129258906)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
th (LOC129282398)
gastrula–juvenile (6 images)
Stages: mid-gastrula stage, early feeding larva period, late feeding larva period, early juvenile stage
Tissues: dopaminergic neuron
timeless (LOC129257917)
gastrula–juvenile (4 images)
Stages: mid-gastrula stage, early feeding larva period
Tissues: whole organism
tp53bp1 (LOC129262594)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: endoderm
traf3ip1 (LOC129256931)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
trpc4ap (LOC129254087)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: mesoderm, non-skeletogenic mesoderm
U
univin (LOC129264991)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
W
wnt8a (LOC129282012)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
Tissues: ectoderm
Z
zc4h2 (LOC129258895)
early embryo (2 images)
Stages: mid-mesenchyme blastula stage, mid-gastrula stage, late gastrula stage
How to cite this atlas
Please cite both the original image paper (the data) and Echinobase (where the images are served and annotated):
- Images (early-embryo HCR series): Lee Y, Jenniches C, Metry R, Renaudin G, Kling S, Tjeerdema E, Jackson EW, Hamdoun A. Automated, high-throughput in situ hybridization of sea urchin (Lytechinus pictus) embryos. Development (2025) 152: dev204814. doi:10.1242/dev.204814
- This resource: Telmer CA, Karimi K, Chess MM, Agalakov S, Arshinoff BI, Lotay V, Wang DZ, Chu S, Pells TJ, Vize PD, Hinman VF, Ettensohn CA. Echinobase: a resource to support the echinoderm research community. Genetics (2024) 227: iyae002. doi:10.1093/genetics/iyae002
Both image series are HCR from the Hamdoun Lab. Cite Lee et al. (2025) for the HT-HCR method and early-embryo atlas; gastrula–juvenile images are also from that lab. Cite Echinobase for the curated gene pages. If you reuse ECAO stage or anatomy terms, also cite Ettensohn et al. 2026.